PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN18668.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 347aa    MW: 39632.7 Da    PI: 7.2637
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN18668.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-1244100155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  KHN18668.1  44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100
                 57*******************99998898888888********************98 PP

2AP250.74.6e-16143194155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KHN18668.1 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194
                 89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1544110IPR016177DNA-binding domain
PfamPF008472.4E-844100IPR001471AP2/ERF domain
SMARTSM003802.0E-2045114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-1345109IPR001471AP2/ERF domain
PROSITE profilePS5103218.82145108IPR001471AP2/ERF domain
PRINTSPR003673.9E-64657IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17143204IPR016177DNA-binding domain
PfamPF008471.2E-11143194IPR001471AP2/ERF domain
CDDcd000181.32E-23143204No hitNo description
SMARTSM003802.7E-25144208IPR001471AP2/ERF domain
PROSITE profilePS5103218.307144202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17144203IPR001471AP2/ERF domain
PRINTSPR003673.9E-6184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAKQQTHKIN ASTNNNISTT NTVTAKVKRT RRSVPRDSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYQNELKEME  120
GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AATAYDMAAI EYRGVNAVTN FDLSRYIKWL KPNNNNTTVN SNLIDSNPNC ETNFTSNSNQ  240
QQGFNFFNRQ ESFNNEEAAM TQPRPAVATS ALGLLLQSSK FKEMMEMTSA TDLSTPPSES  300
ELPSCTFPDD IQTYFECEDS HRYGEGDDIM FSVLNGFVPP MFHCDDF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351680.0AC235168.1 Glycine max strain Williams 82 clone GM_WBb0001B19, complete sequence.
GenBankAC2354160.0AC235416.1 Glycine max strain Williams 82 clone GM_WBb0132F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006579217.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-115AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0B2QFB90.0A0A0B2QFB9_GLYSO; AP2-like ethylene-responsive transcription factor
TrEMBLK7KK620.0K7KK62_SOYBN; Uncharacterized protein
STRINGGLYMA04G24010.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]